Brief Description
This position is currently part of the Quantori Talent Pool, meaning it's not an active opening at the moment. However, we welcome the opportunity to discuss your interest and would be happy to chat with you about considering your CV for upcoming opportunities in this role.
Responsibilities
- Collaborate closely with clients to understand their specific research goals and design tailored bioinformatics and data analysis solutions
- Collaborate with interdisciplinary teams of biologists, geneticists, and data scientists to develop and implement computational strategies for analyzing large-scale biological datasets
- Develop and implement computational pipelines and workflows for processing and analyzing diverse biological data types, including genomics, transcriptomics, proteomics, and metabolomics
- Participation in developing pipelines for processing NGS data (single-cell and bulk RNA-seq) by using Nextflow
- Perform statistical analysis and data mining to identify patterns, correlations, and biomarkers
- Apply statistical modeling and machine learning techniques to identify patterns, correlations, and predictive models from large-scale datasets
- Stay up-to-date with the latest advancements in bioinformatics and contribute to the continuous improvement of existing methodologies and algorithms
- Present findings and results to internal teams and external stakeholders in a clear and concise manner
Requirements
- Experience in: Unix, SQL databases (PostgreSQL), REST APIs, Cloud computing (AWS), and HPC (High Performance Computing)
- Solid understanding of bioinformatics concepts, algorithms, and tools
- Proven experience in analyzing high-throughput genomic, transcriptomic, or proteomic data
- Hands-on experience with creating single-cell and bulk RNA-seq data processing pipelines
- Proficiency in pipeline development using Nextflow (preferred), Cromwell, or other popular framework
- Programming skills: Solid Python programming skills, as well as experience in other programming languages and experience with relevant bioinformatics software and tools
- Solid knowledge of statistical analysis, machine learning, and data mining techniques
- English level B2 or higher
- Strong communication and negotiation skills in interactions with the research scientists
Nice to have:
- Experience in next-generation sequencing (NGS) data analysis and variant calling
- Knowledge of structural bioinformatics and molecular modeling
- Familiarity with cloud computing platforms and big data analysis frameworks
- Prior experience in the analysis of single-cell RNA sequencing (scRNA-seq) or single-cell genomics data
- Familiarity with cloud computing platforms and big data analysis frameworks
- Experience with processing scTCR and scCITE-seq data
- Experience with deploying pipelines to AWS
- Familiarity with Cell Ranger and/or TRUST4 software packages
- Strong communication and interpersonal skills with the ability to effectively collaborate with cross-functional teams and communicate complex concepts to non-technical stakeholders
- Experience with orchestration tools and virtualized environments (Docker, K8S)
Conditions
- Competitive compensation
- Remote or office work
- Flexible working hours
- Healthcare benefits: medical insurance
- Continuous education, mentoring, and professional development programs
- A team with an excellent tech expertise
- Certifications paid by the company
Contact Information
career@quantori.com
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